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Tobias Allander Group

Our main interest is the application of metagenomic sequencing, both for direct diagnostic use and for studying viral populations in health and disease.

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Our research

Virus infections impose a huge disease burden on humanity, from common colds to pandemic outbreaks, chronic virus infections, and cancer. Optimal identification of viral agents is therefore fundamental to many aspects of clinical medicine.

The group is based at the Department of Clinical Microbiology at Karolinska University Hospital, and the research is focused on improving diagnostic methods for viral infections. This includes exploration of viral diversity, identification of new viruses, and studying the relationship between newly discovered viruses and disease.

Our main interest is the application of metagenomic sequencing, both for direct diagnostic use and for studying viral populations in health and disease. We also develop new bioinformatic tools for describing viral diversity and searching for unknown agents. This is done in collaboration with Prof. Bj枚rn Andersson at the Department of Cell- and Molecular Biology, KI.

We have so far described two prevalent human viruses: Human bocavirus (HBoV-1) and KI polyomavirus (KIPyV). We have linked HBoV-1 to acute respiratory tract disease in children, and HBoV-1 tests are now routinely provided to health care around the world. Diagnostic and epidemiological studies of HBoV-1 and other respiratory viruses remains another important line of research of the group.

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Publications

Selected publications

  • Article: CANCER RESEARCH COMMUNICATIONS. 2022;2(2):110-130
    Masso-Valles D; Beaulieu M-E; Jauset T; Giuntini F; Zacarias-Fluck MF; Foradada L; Martinez-Martin S; Serrano E; Martin-Fernandez G; Casacuberta-Serra S; Cano VC; Kaur J; Lopez-Estevez S; Morcillo MA; Alzrigat M; Mahmoud L; Luque-Garcia A; Escorihuela M; Guzman M; Arribas J; Serra V; Larsson L-G; Whitfield JR; Soucek L
  • Journal article: INVESTIGATIONAL NEW DRUGS. 2021;39(2):587-594
    AlSultan D; Kavanagh E; O'Grady S; Eustace AJ; Castell A; Larsson L-G; Crown J; Madden SF; Duffy MJ
  • Article: CELL CYCLE. 2021;20(1):23-38
    Bazzar W; Bocci M; Hejll E; Hogqvist Tabor V; Hydbring P; Grandien A; Alzrigat M; Larsson L-G
  • Article: METHODS IN MOLECULAR BIOLOGY. 2021;2318:241-254
    Zhang F; Bazzar W; Alzrigat M; Larsson L-G
  • Article: ELIFE. 2020;9:e57894
    Brunner A; Rahmanto AS; Johansson H; Franco M; Viiliainen J; Gazi M; Frings O; Fredlund E; Spruck C; Lehtio J; Rantala JK; Larsson L-G; Sangfelt O
  • Article: SCIENTIFIC REPORTS. 2018;8(1):10064
    Castell A; Yan Q; Fawkner K; Hydbring P; Zhang F; Verschut V; Franco M; Zakaria SM; Bazzar W; Goodwin J; Zinzalla G; Larsson L-G
  • Review: GENES. 2017;8(7):E174-174
    Hydbring P; Castell A; Larsson L-G
  • Article: ONCOTARGET. 2016;7(3):2837-2854
    Bahram F; Hydbring P; Tronnersjo S; Zakaria SM; Frings O; Fahlen S; Nilsson H; Goodwin J; von der Lehr N; Su Y; Luescher B; Castell A; Larsson L-G
  • Editorial comment: CANCER DISCOVERY. 2015;5(7):701-703
    Castell A; Larsson L-G
  • Article: CANCER RESEARCH. 2014;74(16):4222-4229
    Tabor V; Bocci M; Alikhani N; Kuiper R; Larsson L-G
  • Article: EMBO MOLECULAR MEDICINE. 2013;5(7):1067-1086
    Cepeda D; Ng H-F; Sharifi HR; Mahmoudi S; Soto Cerrato V; Fredlund E; Magnusson K; Nilsson H; Malyukova A; Rantala J; Klevebring D; Vinals F; Bhaskaran N; Zakaria SM; Rahmanto AS; Grotegut S; Nielsen ML; Szigyarto CA-K; Sun D; Lerner M; Navani S; Widschwendter M; Uhlen M; Jirstrom K; Ponten F; Wohlschlegel J; Grander D; Spruck C; Larsson L-G; Sangfelt O
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012;109(4):E187-E196
    Menssen A; Hydbring P; Kapelle K; Vervoorts J; Diebold J; Luescher B; Larsson L-G; Hermeking H
  • Review: SEMINARS IN CANCER BIOLOGY. 2011;21(6):367-376
    Larsson L-G
  • Review: CANCER RESEARCH. 2010;70(17):6687-6691
    Hydbring P; Larsson L-G
  • Review: EXPERIMENTAL CELL RESEARCH. 2010;316(8):1429-1437
    Larsson L-G; Henriksson MA
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2010;107(1):58-63
    Hydbring P; Bahram F; Su Y; Tronnersjo S; Hogstrand K; von der Lehr N; Sharifi HR; Lilischkis R; Hein N; Wu S; Vervoorts J; Henriksson M; Grandien A; Luscher B; Larsson L-G
  • Article: NATURE CELL BIOLOGY. 2010;12(1):54-59
    Campaner S; Doni M; Hydbring P; Verrecchia A; Bianchi L; Sardella D; Schleker T; Perna D; Tronnersjo S; Murga M; Fernandez-Capetillo O; Barbacid M; Larsson L-G; Amati B
  • Article: NATURE METHODS. 2006;3(12):995-1000
    S枚derberg O; Gullberg M; Jarvius M; Ridderstr氓le K; Leuchowius K-J; Jarvius J; Wester K; Hydbring P; Bahram F; Larsson L-G; Landegren U
  • Article: NATURE CELL BIOLOGY. 2005;7(3):303-310
    Arabi A; Wu SQ; Ridderstr氓le K; Bierhoff H; Shiue C; Fatyol K; Fahl茅n S; Hydbring P; S枚derberg O; Grummt I; Larsson LG; Wright APH
  • Article: MOLECULAR CELL. 2003;11(5):1189-1200
    von der Lehr N; Johansson S; Wu SQ; Bahram F; Castell A; Cetinkaya C; Hydbring P; Weidung I; Nakayama K; Nakayama KI; S枚derberg O; Kerppola TK; Larsson LG
  • Article: BLOOD. 2000;95(6):2104-2110
    Bahram F; von der Lehr N; Cetinkaya C; Larsson LG
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