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Topoisomerases, chromatin biology and cancer – Laura Baranello's group

Topoisomerases, chromatin biology and cancer

Group picture of Laura Baranello's group

Our research

Cancer is a biologically complex disease that causes significant deaths in the human population. Pharmaceuticals that inhibit enzymes called topoisomerases are effective at killing many types of cancer cells. Unfortunately, the body’s healthy cells are also damaged by this treatment. Development of tumor-specific topoisomerase inhibitor-based therapies will require better knowledge of the mechanism of topoisomerase activity.

Topoisomerases are important cellular enzymes; they are involved in processes in which genes are copied, or when DNA is replicated prior to cell division. They unwind the DNA double helix, so that the enzymes that are going to transcribe genes or replicate DNA strands are able to do so.

Although conventionally considered to be constitutively active enzymes, recent evidence show that topoisomerases execute their function through regulatory interactions with partner proteins that modulate their activity to affect the transcriptional outcome. Understanding the mechanism of this regulation might provide a new strategy to affect topoisomerase activity in cancer cells.

Projects

Our ongoing and future investigations are based on these findings. We use a variety of approaches including biochemical assays, next-generation sequencing techniques, genome editing and drug screens to:

  • Identify new proteins regulating topoisomerase 1 and topoisomerase 2 activity. Among the potential partners we focus on transcription and chromatin factors.
  • Understand the molecular details of how topoisomerases are regulated by their protein partners during transcription.
  • Identify drugs targeting the stimulation of topoisomerase activity in cancer cells.

Collaborations

Our research is performed with a number of national and international collaborators:

, ̽»¨¾«Ñ¡
, National Institutes of Health, USA
, National Institutes of Health
Dr. Mazza (San Raffaele Hospital/Italy)
Prof. Dr. Hahn (Uni Bochum/Ger)
Prof. Dr. Vindigni (Washington University/USA)

Conference organiser

Cell and Molecular Biology seminar series

Co-Organizer of Cell and Molecular Biology Departmental Retreat 2023

Publications

Selected publications

  • Article: SCIENCE ADVANCES. 2022;8(49):eabq0648
    Meroni A; Grosser J; Agashe S; Ramakrishnan N; Jackson J; Verma P; Baranello L; Vindigni A
  • Article: STAR PROTOCOLS. 2022;3(3):101581
    Kuzin V; Wiegard A; Cameron DP; Baranello L
  • Article: MOLECULAR CELL. 2022;82(1):140-158.e12
    Das SK; Kuzin V; Cameron DP; Sanford S; Jha RK; Nie Z; Rosello MT; Holewinski R; Andresson T; Wisniewski J; Natsume T; Price DH; Lewis BA; Kouzine F; Levens D; Baranello L
  • Article: MOLECULAR CELL. 2021;81(24):5007-5024.e9
    Wiegard A; Kuzin V; Cameron DP; Grosser J; Ceribelli M; Mehmood R; Ballarino R; Valant F; Grochowski R; Karabogdan I; Crosetto N; Lindqvist A; Bizard AH; Kouzine F; Natsume T; Baranello L
  • Article: PLOS PATHOGENS. 2021;17(9):e1009954
    Li J; Nagy N; Liu J; Gupta S; Frisan T; Hennig T; Cameron DP; Baranello L; Masucci MG
  • Article: PLOS GENETICS. 2021;17(9):e1009763
    Wu P-S; Grosser J; Cameron DP; Baranello L; Strom L
  • Article: METHODS IN MOLECULAR BIOLOGY. 2021;2318:161-185
    Cameron DP; Kuzin V; Baranello L
  • Article: CELL SYSTEMS. 2017;4(3):344-356.e7
    Kouzine F; Wojtowicz D; Baranello L; Yamane A; Nelson S; Resch W; Kieffer-Kwon K-R; Benham CJ; Casellas R; Przytycka TM; Levens D
  • Article: CELL. 2016;165(2):357-371
    Baranello L; Wojtowicz D; Cui K; Devaiah BN; Chung H-J; Chan-Salis KY; Guha R; Wilson K; Zhang X; Zhang H; Piotrowski J; Thomas CJ; Singer DS; Pugh BF; Pommier Y; Przytycka TM; Kouzine F; Lewis BA; Zhao K; Levens D
  • Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2014;15(7):13111-13122
    Baranello L; Kouzine F; Wojtowicz D; Cui K; Przytycka TM; Zhao K; Levens D
  • Article: NUCLEUS. 2014;5(3):195-202
    Kouzine F; Levens D; Baranello L
  • Editorial comment: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(3):889-890
    Baranello L; Kouzine F; Levens D

Funding

  • Wallenberg Foundation (Wallenberg Academy Fellow)
  • VetenskapsrÃ¥det (Starting Grant)
  • VetenskapsrÃ¥det (Project Grant)
  • NBIS
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  • KID grant
  • VINNOVA (VINNMER Marie Curie Incoming)
  • Cancerfonden

Staff and contact

Group leader

All members of the group