Project: Using text mining to aid cancer risk assessment and research
The CRAB, CHAT and LION are three different text mining-based tools for literature review and knowledge discovery. These tools have been developed for cancer risk assessment and research in collaboration with (UK) and can assist risk assessors and researchers with the management of large textual data and aid knowledge discovery. The tools are based on text mining and literature-based discovery - a growing field of computer science which discovers new knowledge by automatically extracting information from written texts. They can assist researchers and risk assessors in their work and contribute to effective management of health risks in the future. The LION project is a collaboration between the (UK) and the (UK).
Links to the tools:
- – classifies the scientific literature according to carcinogenic mode of action.
- – classifies the scientific literature according to the Cancer Hallmarks.
- – a literature-based discovery system for cancer biology
Contact
Ulla Stenius
ProfessorFinancing
- Medical Research Councils, UK
Publications
Ali I, Dreij K, Baker S, Högberg J, Korhonen A, Stenius U
Environ Health Perspect 2021 Jun;129(6):67008
Pyysalo S, Baker S, Ali I, Haselwimmer S, Shah T, Young A, et al
Bioinformatics 2019 05;35(9):1553-1561
Technology Networks, November 28, 2018.
Baker S, Ali I, Silins I, Pyysalo S, Guo Y, Högberg J, et al
Bioinformatics 2017 Dec;33(24):3973-3981
Larsson K, Baker S, Silins I, Guo Y, Stenius U, Korhonen A, et al
PLoS ONE 2017 ;12(3):e0173132
Ali I, Guo Y, Silins I, Högberg J, Stenius U, Korhonen A
Toxicol. Lett. 2016 Jan;241():32-7
Baker S, Silins I, Guo Y, Ali I, Högberg J, Stenius U, et al
Bioinformatics 2016 Feb;32(3):432-40
Silins I, Korhonen A, Stenius U
Front Pharmacol 2014 ;5():145
Guo Y, Silins I, Stenius U, Korhonen A
Bioinformatics 2013 Jun;29(11):1440-7
Korhonen A, Séaghdha D, Silins I, Sun L, Högberg J, Stenius U
PLoS ONE 2012 ;7(4):e33427
Silins I, Korhonen A, Högberg J, Stenius U
Integr Environ Assess Manag 2012 Jul;8(3):412-7
Guo Y, Korhonen A, Silins I, Stenius U
Bioinformatics 2011 Nov;27(22):3179-85
Guo Y, Korhonen A, Liakata M, Silins I, Hogberg J, Stenius U
BMC Bioinformatics 2011 Mar;12():69
Guo Y, Sun L, Korhonen A, Liakata M, Silins I, Sun L and Stenius U (2010).
In Proceedings of Bio-Natural Language Processing (BioNLP) Uppsala, Sweden.
Korhonen A, Silins I, Sun L, Stenius U
BMC Bioinformatics 2009 Sep;10():303
Sun L, Korhonen A, Silins I, and Stenius U. (2009).
In Proceedings of the Natural Language Processing in Biomedicine (BioNLP) 2009. Boulder, Colorado.
Lewin I, Silins I, Korhonen A, Hogberg J and Stenius U. (2008).
In Proceedings of the ISMB BioLINK Special Interest Group on Text Data Mining. Toronto, Canada.