探花精选

Trung Nghia Vu

Trung Nghia Vu

Principal Researcher
Telephone: +46852482268
Visiting address: Nobels v盲g 12A, 17165 Solna
Postal address: C8 Medicinsk epidemiologi och biostatistik, C8 MEB I Vu Trung, 171 77 Stockholm
Part of:

About me

  • Personal webpage:

    - 2009 - 2014: PhD, Department of Mathematics and Computer Science,  


  • University of Antwerp, Belgium.
    - 2006 - 2008: MSc, Department of Computer Engineering, Korea Aerospace 

  • University, South Korea.
    - 2000 - 2004: BSC, Faculty of Technology, Vietnam National University 

  • in Hanoi, Viet Nam.

Research

  • My research focuses on developing and applying statistical and bioinformatics methods for molecular biology and medicine. I am interested in methodologies to analyze single cell data, discover fusion genes, circular RNAs, and driver genes from cancer, quantify isoform and gene expression from transcriptomics and metagenomics, predict drug responses and drug repurposing using pharmacogenomics data.

    Further details can be read at the webpage of my research group: /en/research/research-areas-centres-and-networks/research-groups/trung-nghia-vus-research-group

    Our group has developed 20 statistical and bioinformatics/statistical tools which are mostly published in a peer-reviewed scientific articles and publicly available for academic use. Most of tools are implemented using R, Rshiny, C/C++ and available at the Biostat Wiki 

  • webpage ()

    Our research is supported by the Swedish Research Council, CancerFonden, and 探花精选

     

Teaching

  • SUPERVISION

    To defense

    - Quang Thinh Trac (PhD student, KI, main supervisor, completed Oct 2024)

    - Lu Pan (PhD student, KI, main supervisor, completed Mar 2023)

    - Wenjiang Deng (PhD student, KI, co-supervisor, completed Sep 2021)

    - Thanh Dat Nguyen (master student, Tel-Aviv University, thesis supervisor, completed 2020)

    Ongoing

    - Gulser Caliskan (postdoc, KI, main supervisor, since 2023)

    - Meghana Alugunoolla (master student, Upsala University, main supervisor, since 2024)

    - Yuying Li (PhD student, KI, co-supervisor, since 2021)

    - Aron Arzoomand (PhD student, KI, co-supervisor, since 2021)

     

  • TEACHING

    - Master course 鈥淏iostatistics鈥 in the Master of Molecular Techniques, KI, Sweden (2023 &

  • 2024)

    - Doctoral course 鈥淚ntroduction to R for data analysis鈥, KI, Sweden (2025)

     

 

    • Articles

    • Journal article: EJHAEM. 2024;5(4):721-727
      Caliskan G; Pawitan Y; Vu TN
    • Article: BMC BIOINFORMATICS. 2024;25(1):31
      Nguyen T-H; Nguyen H-N; Vu TN
    • Journal article: CONSERVATION PHYSIOLOGY. 2024;12(1):coae054
      De Boeck G; Lardon I; Eyckmans M; Vu TN; Laukens K; Dommisse R; Wood CM
    • Article: PHENOMICS. 2023;3(3):217-227
      Pan L; Zheng C; Yang Z; Pawitan Y; Vu TN; Shen X
    • Journal article: CANCER RESEARCH. 2023;83(7):6612
      Erkers T; Struyf N; James T; Marabita F; Vesterlund M; Vu N; Arnroth C; Osterroos A; Bohlin A; Bengtzen S; Stahl M; Jafari R; Orre L; Pawitan Y; Seashore-Ludlow B; Lehtio J; Lehmann S; Ostling P; Kallioniemi O
    • Article: DATA IN BRIEF. 2023;47:108932
      Nguyen TT; Le HV; Xuan DP; Vu TN; Nguyen MH; Tran HTT
    • Article: CANCER MEDICINE. 2023;12(8):10156-10168
      Silvestri M; Vu TN; Nichetti F; Niger M; Di Cosimo S; De Braud F; Pruneri G; Pawitan Y; Calza S; Cappelletti V
    • Article: NPJ PRECISION ONCOLOGY. 2023;7(1):32
      Trac QT; Pawitan Y; Mou T; Erkers T; Ostling P; Bohlin A; Osterroos A; Vesterlund M; Jafari R; Siavelis I; Backvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehtio J; Lehmann S; Kallioniemi O; Vu TN
    • Article: SENSORS. 2023;23(3):1432
      Mou T; Liang J; Vu TN; Tian M; Gao Y
    • Journal article: PHENOMICS. 2023;:1
      Pan L; Zheng C; Yang Z; Pawitan Y; Vu TN; Shen X
    • Article: NATURE COMMUNICATIONS. 2022;13(1):6733
      Yazdani S; Seitz C; Cui C; Lovik A; Pan L; Piehl F; Pawitan Y; Klappe U; Press R; Samuelsson K; Yin L; Vu TN; Joly A-L; Westerberg LS; Evertsson B; Ingre C; Andersson J; Fang F
    • Article: GIGASCIENCE. 2022;11:giac091
      Quang TT; Zhou T; Pawitan Y; Trung NV
    • Article: NAR GENOMICS AND BIOINFORMATICS. 2022;4(3):lqac052
      Deng W; Mou T; Pawitan Y; Trung NV
    • Article: BMC GENOMICS. 2022;23(1):106
      Manh HN; Ha-Nam N; Trung NV
    • Article: BIOINFORMATICS. 2022;38(5):1287-1294
      Pan L; Dinh HQ; Pawitan Y; Trung NV
    • Article: FRONTIERS IN GENETICS. 2022;13:820493
      Deng W; Murugan S; Lindberg J; Chellappa V; Shen X; Pawitan Y; Vu TN
    • Article: BMC BIOINFORMATICS. 2021;22(1):495
      Nguyen DT; Trac QT; Nguyen T-H; Nguyen H-N; Ohad N; Pawitan Y; Vu TN
    • Article: AMERICAN JOURNAL OF HEMATOLOGY. 2021;96(5):580-588
      Mou T; Pawitan Y; Stahl M; Vesterlund M; Deng W; Jafari R; Bohlin A; Osterroos A; Siavelis L; Backvall H; Erkers T; Kiviluoto S; Seashore-Ludlow B; Ostling P; Orre LM; Kallioniemi O; Lehmann S; Lehtio J; Trung NV
    • Article: BIOINFORMATICS. 2020;36(3):805-812
      Deng W; Mou T; Kalari KR; Niu N; Wang L; Pawitan Y; Trung NV
    • Article: BIOINFORMATICS. 2019;35(22):4679-4687
      Trung NV; Ha-Nam N; Calza S; Kalari KR; Wang L; Pawitan Y
    • Show more

    All other publications

    • Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2024
      Trac QT; Huang Y; Erkers T; 脰stling P; Bohlin A; 脰sterroos A; Vesterlund M; Jafari R; Siavelis I; B盲ckvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehti枚 J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
    • Preprint: BIORXIV. 2024
      Trac QT; Huang Y; Erkers T; 脰stling P; Bohlin A; 脰sterroos A; Vesterlund M; Jafari R; Siavelis I; B盲ckvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehti枚 J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
    • Conference publication: 2023;00:1-4
      Hoang VP; Trac QT; Nguyen H-N; Vu TN
    • Conference publication: HUMAN HEREDITY. 2017;83(1):4-5
      Vu N; Calza S; Pawitan Y
    • Conference publication: 2012;1:1-4
      Do Duc D; Le T-T; Vu T-N; Dinh HQ; Huan HX
    • Conference publication: 2009;:130-136
      Le T-T; Vu T-N; Trang NTT; Nguyen H-N
    • Book chapter: MEDICAL BIOMETRICS: LECTURE NOTES IN COMPUTER SCIENCE (INCLUDING SUBSERIES LECTURE NOTES IN ARTIFICIAL INTELLIGENCE AND LECTURE NOTES IN BIOINFORMATICS). 2007;p. 17-24
      Vu T-N; Ohn S-Y; Kim C-W
    • Book chapter: MICAI 2006: ADVANCES IN ARTIFICIAL INTELLIGENCE: LECTURE NOTES IN COMPUTER SCIENCE (INCLUDING SUBSERIES LECTURE NOTES IN ARTIFICIAL INTELLIGENCE AND LECTURE NOTES IN BIOINFORMATICS). 2006;p. 532-542
      Nguyen H-N; Vu T-N; Ohn S-Y; Park Y-M; Han MY; Kim CW

    Grants

    • Swedish Research Council
      1 January 2024 - 31 December 2026
    • Swedish Cancer Society
      1 January 2023
    • Swedish Research Council
      1 January 2020 - 31 December 2023

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