探花精选

Trung Nghia Vu

Trung Nghia Vu

Principal Researcher
Telephone: +46852482268
Visiting address: Nobels v盲g 12A, 17165 Solna
Postal address: C8 Medicinsk epidemiologi och biostatistik, C8 MEB I Vu Trung, 171 77 Stockholm

About me

  • Personal webpage:

    - 2009 - 2014: PhD, Department of Mathematics and Computer Science,  
    University of Antwerp, Belgium.
    - 2006 - 2008: MSc, Department of Computer Engineering, Korea Aerospace 
    University, South Korea.
    - 2000 - 2004: BSC, Faculty of Technology, Vietnam National University 
    in Hanoi, Viet Nam.

Research

  • My research focuses on developing and applying statistical and bioinformatics methods for molecular biology and medicine. I am interested in methodologies to analyze single cell data, discover fusion genes, circular RNAs, and driver genes from cancer, quantify isoform and gene expression from transcriptomics and metagenomics, predict drug responses and drug repurposing using pharmacogenomics data.

    Further details can be read at the webpage of my research group: /en/research/research-areas-centres-and-networks/research-groups/trung-nghia-vus-research-group

    Our group has developed 20 statistical and bioinformatics/statistical tools which are mostly published in a peer-reviewed scientific articles and publicly available for academic use. Most of tools are implemented using R, Rshiny, C/C++ and available at the Biostat Wiki  webpage ()

    Our research is supported by the Swedish Research Council, CancerFonden, and 探花精选

     

Teaching

  • SUPERVISION

    To defense

    - Quang Thinh Trac (PhD student, KI, main supervisor, completed Oct 2024)

    - Lu Pan (PhD student, KI, main supervisor, completed Mar 2023)

    - Wenjiang Deng (PhD student, KI, co-supervisor, completed Sep 2021)

    - Thanh Dat Nguyen (master student, Tel-Aviv University, thesis supervisor, completed 2020)

    Ongoing

    - Gulser Caliskan (postdoc, KI, main supervisor, since 2023)

    - Meghana Alugunoolla (master student, Upsala University, main supervisor, since 2024)

    - Yuying Li (PhD student, KI, co-supervisor, since 2021)

    - Aron Arzoomand (PhD student, KI, co-supervisor, since 2021)

     

    TEACHING

    - Master course 鈥淏iostatistics鈥 in the Master of Molecular Techniques, KI, Sweden (2023 & 2024)

    - Doctoral course 鈥淚ntroduction to R for data analysis鈥, KI, Sweden (2025)

     

     

Articles

  • Article: EJHAEM. 2024;5(4):721-727
    Caliskan G; Pawitan Y; Vu TN
  • Article: BMC BIOINFORMATICS. 2024;25(1):31
    Nguyen T-H; Nguyen H-N; Vu TN
  • Article: CONSERVATION PHYSIOLOGY. 2024;12(1):coae054
    De Boeck G; Lardon I; Eyckmans M; Vu TN; Laukens K; Dommisse R; Wood CM
  • Article: PHENOMICS. 2023;3(3):217-227
    Pan L; Zheng C; Yang Z; Pawitan Y; Vu TN; Shen X
  • Journal article: CANCER RESEARCH. 2023;83(7):6612
    Erkers T; Struyf N; James T; Marabita F; Vesterlund M; Vu N; Arnroth C; Osterroos A; Bohlin A; Bengtzen S; Stahl M; Jafari R; Orre L; Pawitan Y; Seashore-Ludlow B; Lehtio J; Lehmann S; Ostling P; Kallioniemi O
  • Article: DATA IN BRIEF. 2023;47:108932
    Nguyen TT; Le HV; Xuan DP; Vu TN; Nguyen MH; Tran HTT
  • Article: CANCER MEDICINE. 2023;12(8):10156-10168
    Silvestri M; Vu TN; Nichetti F; Niger M; Di Cosimo S; De Braud F; Pruneri G; Pawitan Y; Calza S; Cappelletti V
  • Article: NPJ PRECISION ONCOLOGY. 2023;7(1):32
    Trac QT; Pawitan Y; Mou T; Erkers T; Ostling P; Bohlin A; Osterroos A; Vesterlund M; Jafari R; Siavelis I; Backvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehtio J; Lehmann S; Kallioniemi O; Vu TN
  • Article: SENSORS. 2023;23(3):1432
    Mou T; Liang J; Vu TN; Tian M; Gao Y
  • Journal article: PHENOMICS. 2023;:1
    Pan L; Zheng C; Yang Z; Pawitan Y; Vu TN; Shen X
  • Article: NATURE COMMUNICATIONS. 2022;13(1):6733
    Yazdani S; Seitz C; Cui C; Lovik A; Pan L; Piehl F; Pawitan Y; Klappe U; Press R; Samuelsson K; Yin L; Vu TN; Joly A-L; Westerberg LS; Evertsson B; Ingre C; Andersson J; Fang F
  • Article: GIGASCIENCE. 2022;11:giac091
    Quang TT; Zhou T; Pawitan Y; Trung NV
  • Article: NAR GENOMICS AND BIOINFORMATICS. 2022;4(3):lqac052
    Deng W; Mou T; Pawitan Y; Trung NV
  • Article: BMC GENOMICS. 2022;23(1):106
    Manh HN; Ha-Nam N; Trung NV
  • Article: BIOINFORMATICS. 2022;38(5):1287-1294
    Pan L; Dinh HQ; Pawitan Y; Trung NV
  • Article: FRONTIERS IN GENETICS. 2022;13:820493
    Deng W; Murugan S; Lindberg J; Chellappa V; Shen X; Pawitan Y; Vu TN
  • Article: BMC BIOINFORMATICS. 2021;22(1):495
    Nguyen DT; Trac QT; Nguyen T-H; Nguyen H-N; Ohad N; Pawitan Y; Vu TN
  • Article: AMERICAN JOURNAL OF HEMATOLOGY. 2021;96(5):580-588
    Mou T; Pawitan Y; Stahl M; Vesterlund M; Deng W; Jafari R; Bohlin A; Osterroos A; Siavelis L; Backvall H; Erkers T; Kiviluoto S; Seashore-Ludlow B; Ostling P; Orre LM; Kallioniemi O; Lehmann S; Lehtio J; Trung NV
  • Article: BIOINFORMATICS. 2020;36(3):805-812
    Deng W; Mou T; Kalari KR; Niu N; Wang L; Pawitan Y; Trung NV
  • Article: BIOINFORMATICS. 2019;35(22):4679-4687
    Trung NV; Ha-Nam N; Calza S; Kalari KR; Wang L; Pawitan Y
  • Article: FRONTIERS IN GENETICS. 2019;10:1331
    Mou T; Deng W; Gu F; Pawitan Y; Trung NV
  • Article: BMC GENOMICS. 2018;19(1):786
    Trung NV; Deng W; Quang TT; Calza S; Hwang W; Pawitan Y
  • Article: BIOLOGY DIRECT. 2018;13(1):14
    Suo C; Deng W; Trung NV; Li M; Shi L; Pawitan Y
  • Article: BIOINFORMATICS. 2018;34(14):2392-2400
    Trung NV; Wills QF; Kalari KR; Niu N; Wang L; Pawitan Y; Rantalainen M
  • Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(3):e1006018
    Beirnaert C; Meysman P; Trung NV; Hermans N; Apers S; Pieters L; Covaci A; Laukens K
  • Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2017;31(17):1396-1404
    Mrzic A; Lermyte F; Trung NV; Valkenborg D; Laukens K
  • Article: ONCOTARGET. 2016;7(42):68851-68863
    Vu TN; Pramana S; Calza S; Suo C; Lee D; Pawitan Y
  • Article: BIOINFORMATICS. 2016;32(14):2128-2135
    Trung NV; Wills QF; Kalari KR; Niu N; Wang L; Rantalainen M; Pawitan Y
  • Article: BRIEFINGS IN BIOINFORMATICS. 2015;16(2):216-231
    Naulaerts S; Meysman P; Bittremieux W; Trung NV; Vanden Berghe W; Goethals B; Laukens K
  • Article: JOURNAL OF PROTEOME RESEARCH. 2014;13(9):4175-4183
    Trung NV; Bittremieux W; Valkenborg D; Goethals B; Lemiere F; Laukens K
  • Article: EUPA OPEN PROTEOMICS. 2014;4:87-100
    Dittwald P; Nghia VT; Harris GA; Caprioli RM; Van de Plas R; Laukens K; Gambin A; Valkenborg D
  • Article: BMC CANCER. 2014;14:594
    Wouters A; Pauwels B; Burrows N; Baay M; Deschoolmeester V; Trung NV; Laukens K; Meijnders P; Van Gestel D; Williams KJ; Van den Weyngaert D; Vermorken JB; Pauwels P; Peeters M; Lardon F
  • Article: PROTEOME SCIENCE. 2014;12(1):54
    Trung NV; Mrzic A; Valkenborg D; Maes E; Lemiere F; Goethals B; Laukens K
  • Article: IMMUNOBIOLOGY. 2014;219(1):37-44
    Huyen TTT; Van den Bergh R; Trung NV; Laukens K; Worodria W; Loembe MM; Colebunders R; Kestens L; De Baetselier P; Raes G
  • Article: METABOLOMICS. 2013;9(6):1216-1227
    Lardon I; Eyckmans M; Trung NV; Laukens K; De Boeck G; Dommisse R
  • Article: METABOLITES. 2013;3(2):259-276
    Trung NV; Laukens K
  • Article: METABOLOMICS. 2013;9(2):311-323
    Lardon I; Nilsson GE; Stecyk JAW; Trung NV; Laukens K; Dommisse R; De Boeck G
  • Article: BIOCHIMICA ET BIOPHYSICA ACTA: INTERNATIONAL JOURNAL OF BIOCHEMISTRY AND BIOPHYSICS. 2011;1812(11):1371-1379
    Verwaest KA; Vu TN; Laukens K; Clemens LE; Nguyen HP; Van Gasse B; Martins JC; Van der Linden A; Dommisse R
  • Article: BMC BIOINFORMATICS. 2011;12:405
    Vu TN; Valkenborg D; Smets K; Verwaest KA; Dommisse R; Lemiere F; Verschoren A; Goethals B; Laukens K
  • Article: IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS. 2009;E92D(2):346-348
    Vu T-N; Ohn S-Y
  • Show more

All other publications

  • Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2025
    Trac QT; Huang Y; Erkers T; 脰stling P; Bohlin A; 脰sterroos A; Vesterlund M; Jafari R; Siavelis I; B盲ckvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehti枚 J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
  • Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2024
    Trac QT; Huang Y; Erkers T; 脰stling P; Bohlin A; 脰sterroos A; Vesterlund M; Jafari R; Siavelis I; B盲ckvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehti枚 J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
  • Preprint: BIORXIV. 2024
    Trac QT; Huang Y; Erkers T; 脰stling P; Bohlin A; 脰sterroos A; Vesterlund M; Jafari R; Siavelis I; B盲ckvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehti枚 J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
  • Conference publication: 2023;00:1-4
    Hoang VP; Trac QT; Nguyen H-N; Vu TN
  • Conference publication: HUMAN HEREDITY. 2017;83(1):4-5
    Vu N; Calza S; Pawitan Y
  • Conference publication: 2012;1:1-4
    Do Duc D; Le T-T; Vu T-N; Dinh HQ; Huan HX
  • Conference publication: 2009;:130-136
    Le T-T; Vu T-N; Trang NTT; Nguyen H-N
  • Book chapter: MEDICAL BIOMETRICS: LECTURE NOTES IN COMPUTER SCIENCE. 2007;p. 17-24
    Vu T-N; Ohn S-Y; Kim C-W
  • Book chapter: MICAI 2006: ADVANCES IN ARTIFICIAL INTELLIGENCE: LECTURE NOTES IN COMPUTER SCIENCE. 2006;p. 532-542
    Nguyen H-N; Vu T-N; Ohn S-Y; Park Y-M; Han MY; Kim CW

Grants

  • Swedish Research Council
    1 January 2024 - 31 December 2026
  • Swedish Cancer Society
    1 January 2023
  • Swedish Research Council
    1 January 2020 - 31 December 2023

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