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Shigeaki Kanatani

Shigeaki Kanatani

Research Specialist
Telephone: +46852487159
Visiting address: Solnav盲gen 9, 6C, 17177 Stockholm
Postal address: C2 Medicinsk biokemi och biofysik, C2 Molekyl盲r neurobiologi Uhl茅n, 171 77 Stockholm
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About me

  • I am a research engineer working in BIC imaging facility. I develop new 3D imaging techniques using tissue clearing and light sheet microscopy.

Research

  • I have developed the following innovative 3D imaging methods.

     

    • DIPCO method (Diagnosing Immunolabeled Paraffin-Embedded Cleared Organs)

    *Tanaka N, *Kanatani S, *Kaczynska, et al., Nat Biomed Eng 2020 Jun,  

  • * co-first author

    [1]

     

    • DIIFCO method (Diagnosing In situ Immunofluorescence-labelled Cleared Oncosamples)

    *Tanaka N, *Kanatani S et al., Nat Biomed Eng 2017 Oct

  • 1(10):796-806,  
  • * co-first author

    [2]

     

    • TRISCO method (Tris buffer-mediated Retention of isHCR signal in Clearing Organs)

    S. Kanatani et al., Science 386, 907 (2024).

Articles

  • Article: SCIENCE. 2024;386(6724):907-915
    Kanatani S; Kreutzmann JC; Li Y; West Z; Larsen LL; Nikou DV; Eidhof I; Walton A; Zhang S; Rodriguez-Kirby LR; Skytte JL; Salinas CG; Takamatsu K; Li X; Tanaka DH; Kaczynska D; Fukumoto K; Karamzadeh R; Xiang Y; Uesaka N; Tanabe T; Adner M; Hartman J; Miyakawa A; Sundstrom E; Castelo-Branco G; Roostalu U; Hecksher-Sorensen J; Uhlen P
  • Article: RES SQ. 2024
    Fan R; Zhang D; Rodr铆guez-Kirby L; Lin Y; Song M; Wang L; Wang L; Kanatani S; Jimenez-Beristain T; Dang Y; Zhong M; Kukanja P; Wang S; Chen X; Gao F; Wang D; Xu H; Lou X; Liu Y; Chen J; Sestan N; Uhlen P; Kriegstein AR; Zhao H; Castelo-Branco G
  • Article: JCI INSIGHT. 2024;9(14):e175751
    Fukumoto K; Kanatani S; Jaremko G; West Z; Li Y; Takamatsu K; Al Rayyes I; Mikami S; Niwa N; Axelsson TA; Tanaka N; Oya M; Miyakawa A; Brehmer M; Uhlen P
  • Journal article: NEURO-ONCOLOGY. 2024;26:0
    Ruchiy Y; Nunes D; Salinas C; Kanatani S; Rosen G; Zhao M; Swartling FJ; Rodrigues CFD; Blomgren K; Carlson L-M
  • Article: EXPERIMENTAL EYE RESEARCH. 2023;237:109674
    Krimpenfort LT; Garcia-Collado M; van Leeuwen T; Locri F; Luik A-L; Queiro-Palou A; Kanatani S; Andre H; Uhlen P; Jakobsson L
  • Article: NATURE NEUROSCIENCE. 2023;26(6):1008-1020
    Stratoulias V; Ruiz R; Kanatani S; Osman AM; Keane L; Armengol JA; Rodriguez-Moreno A; Murgoci A-N; Garcia-Dominguez I; Alonso-Bellido I; Ibanez FG; Picard K; Vazquez-Cabrera G; Posada-Perez M; Vernoux N; Tejera D; Grabert K; Cheray M; Gonzalez-Rodriguez P; Perez-Villegas EM; Martinez-Gallego I; Lastra-Romero A; Brodin D; Avila-Carino J; Cao Y; Airavaara M; Uhlen P; Heneka MT; Tremblay M-E; Blomgren K; Venero JL; Joseph B
  • Article: NATURE COMMUNICATIONS. 2023;14(1):3060
    Sunadome K; Erickson AGG; Kah D; Fabry B; Adori C; Kameneva P; Faure L; Kanatani S; Kaucka M; Ellstroem ID; Tesarova M; Zikmund T; Kaiser J; Edwards S; Maki K; Adachi T; Yamamoto T; Fried K; Adameyko I
  • Article: ACTA NEUROPATHOLOGICA. 2022;144(4):651-676
    Gilvesy A; Husen E; Magloczky Z; Mihaly O; Hortobagyi T; Kanatani S; Heinsen H; Renier N; Hokfelt T; Mulder J; Uhlen M; Kovacs GG; Adori C
  • Article: NATURE COMMUNICATIONS. 2022;13(1):1537
    Zhang S; Miyakawa A; Wickstrom M; Dyberg C; Louhivuori L; Varas-Godoy M; Kemppainen K; Kanatani S; Kaczynska D; Ellstrom ID; Elfman L; Kronqvist P; Repo H; Mikoshiba K; Sahlgren C; Johnsen JI; Uhlen P
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2022;119(7):e2108768119
    Smedler E; Louhivuori L; Romanov RA; Masini D; Ellstrom ID; Wang C; Caramia M; West Z; Zhang S; Rebellato P; Malmersjo S; Brusini I; Kanatani S; Fisone G; Harkany T; Uhlen P
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2020;117(50):32005-32016
    Eisinger S; Sarhan D; Boura VF; Ibarlucea-Benitez I; Tyystjarvi S; Oliynyk G; Arsenian-Henriksson M; Lane D; Wikstrom SL; Kiessling R; Virgilio T; Gonzalez SF; Kaczynska D; Kanatani S; Daskalaki E; Wheelock CE; Sedimbi S; Chambers BJ; Ravetch JV; Karlsson MCI
  • Article: EXPERIMENTAL CELL RESEARCH. 2020;395(1):112156
    Phoon YP; Chivukula IV; Tsoi YL; Kanatani S; Uhlen P; Kuiper R; Lendahl U
  • Article: NATURE BIOMEDICAL ENGINEERING. 2020;4(9):875-888
    Tanaka N; Kanatani S; Kaczynska D; Fukumoto K; Louhivuori L; Mizutani T; Kopper O; Kronqvist P; Robertson S; Lindh C; Kis L; Pronk R; Niwa N; Matsumoto K; Oya M; Miyakawa A; Falk A; Hartman J; Sahlgren C; Clevers H; Uhlen P
  • Article: NEUROSCIENCE. 2019;402:78-89
    Rebellato P; Kaczynska A; Kanatani S; Al Rayyes I; Zhang S; Villaescusa C; Falk A; Arenas E; Hermanson O; Louhivuori L; Uhlen P
  • Journal article: EUROPEAN UROLOGY OPEN SCIENCE. 2019;18(1):e658-e659
    Tanaka N; Kanatani S; Kaczynska D; Louhivuori L; Oya M; Miyakawa A; Uhl茅n P
  • Article: BRITISH JOURNAL OF CANCER. 2018;118(7):995-999
    Tanaka N; Kaczynska D; Kanatani S; Sahlgren C; Mitura P; Stepulak A; Miyakawa A; Wiklund P; Uhlen P
  • Journal article: EUROPEAN UROLOGY OPEN SCIENCE. 2018;17(2):e312-e315
    Tanaka N; Kanatani S; Kaczynska D; Louhivuori L; Wiklund P; Oya M; Miyakawa A; Uhl茅n P
  • Article: NATURE BIOMEDICAL ENGINEERING. 2017;1(10):796-806
    Tanaka N; Kanatani S; Tomer R; Sahlgren C; Kronqvist P; Kaczynska D; Louhivuori L; Kis L; Lindh C; Mitura P; Stepulak A; Corvigno S; Hartman J; Micke P; Mezheyeuski A; Strell C; Carlson JW; Moro CF; Dahlstrand H; Ostman A; Matsumoto K; Wiklund P; Oya M; Miyakawa A; Deisseroth K; Uhlen P
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2015;112(36):E4985-E4994
    Kanatani S; Honda T; Aramaki M; Hayashi K; Kubo K-I; Ishida M; Tanaka DH; Kawauchi T; Sekine K; Kusuzawa S; Kawasaki T; Hirata T; Tabata H; Uhlen P; Nakajima K
  • Article: DEVELOPMENTAL NEUROBIOLOGY. 2015;75(4):360-368
    Uhlen P; Fritz N; Smedler E; Malmersjoe S; Kanatani S
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All other publications

  • Preprint: BIORXIV. 2024;BIORXIV
    Zhang D; Rubio Rodr铆guez-Kirby LA; Lin Y; Song M; Wang L; Wang L; Kanatani S; Jimenez-Beristain T; Dang Y; Zhong M; Kukanja P; Wang S; Chen XL; Gao F; Wang D; Xu H; Lou X; Liu Y; Chen J; Sestan N; Uhl茅n P; Kriegstein A; Zhao H; Castelo-Branco G; Fan R
  • Conference publication: JOURNAL OF BONE AND MINERAL RESEARCH. 2023;38:336
    Erickson A; Adameyko I; Sunadome K; Kah D; Fabry B; Adori C; Kanatani S; Kameneva P; Faure L; Kaucka M; Ellstrom ID; Tesarova M; Zikmund T; Kaiser J; Edwards S; Maki K; Adachi T; Fried K
  • Conference publication: GLIA. 2023;71:E512
    Venero JL; Ruiz R; Kanatani S; Osman AM; Keane L; Armengol JA; Rodriguez-Moreno A; Murgoci A-N; Garcia-Dominguez I; Alonso-Bellido I; Ibanez FG; Picard K; Vazquez-Cabrera G; Posada-Perez M; Vernoux N; Tejera D; Grabert K; Cheray M; Gonzalez-Rodriguez P; Perez-Villegas EM; Martinez-Gallego I; Lastra-Romero A; Brodin D; Avila-Carino J; Cao Y; Airavaara M; Uhlen P; Heneka MT; Tremblay M-E; Blomgren K; Stratoulias V; Joseph B
  • Preprint: BIORXIV. 2022
    Kanatani S; Kreutzmann J; Li Y; West Z; Vougesi Nikou D; Lercke Skytte J; Lydolph Larsen L; Tanaka D; Kaczynska D; Fukumoto K; Uesaka N; Tanabe T; Miyakawa A; Roostalu U; Hecksher-S酶rensen J; Uhl茅n P
  • Preprint: BIORXIV. 2022
    Krimpenfort L; Garcia-Collado M; van Leeuwen T; Locri F; Luik A-L; Queiro-Palou A; Kanatani S; Andr茅 H; Uhl茅n P; Jakobsson L
  • Editorial comment: NATURE METHODS. 2022;19(5):527-529
    Kanatani S; Uhlen P
  • Preprint: BIORXIV. 2021
    Stratoulias V; Ruiz R; Kanatani S; Osman A; Armengol J; Rodr铆guez-Moreno A; Murgoci A-N; Garc铆a-Dom铆nguez I; Keane L; V谩zquez-Cabrera G; Alonso-Bellido I; Vernoux N; Tejera D; Grabert K; Cheray M; Gonz谩lez-Rodr铆guez P; P茅rez-Villegas E; Martinez-Gallego I; Brodin D; Avila-Cari帽o J; Airavaara M; Uhl茅n P; Heneka M; Tremblay M-脠; Blomgren K; Venero J; Joseph B
  • Editorial comment: NATURE BIOMEDICAL ENGINEERING. 2018;2(10):717-718
    Louhivuori L; Kanatani S; Uhlen P
  • Corrigendum: NATURE BIOMEDICAL ENGINEERING. 2018;2(1):48
    Tanaka N; Kanatani S; Tomer R; Sahlgren C; Kronqvist P; Kaczynska D; Louhivuori L; Kis L; Lindh C; Mitura P; Stepulak A; Corvigno S; Hartman J; Micke P; Mezheyeuski A; Strell C; Carlson JW; Moro CF; Dahlstrand H; Ostman A; Matsumoto K; Wiklund P; Oya M; Miyakawa A; Deisseroth K; Uhlen P
  • Conference publication: NEUROSCIENCE RESEARCH. 2011;71:E128
    Kusuzawa S; Kanatani S; Golden J; Tanaka D; Nakajima K
  • Published conference paper: JOURNAL OF CHILD NEUROLOGY. 2005;20(4):274-279
    Kanatani S; Tabata H; Nakajima K

Grants

  • Japan Society for the Promotion of Science
    1 January 2011 - 31 December 2012
  • Japan Society for the Promotion of Science
    1 April 2010 - 31 March 2015
  • Japan Society for the Promotion of Science
    1 January 2007 - 31 December 2007

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