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Martin Moche

Martin Moche

Senior Research Infrastructure Specialist
Telephone: +46852486843
Visiting address: Solnavägen 9, 17177 Stockholm
Postal address: C2 Medicinsk biokemi och biofysik, C2 Chemical Biology and Genome engineering PSF, 171 77 Stockholm

About me

  • I am the Macromolecular X-ray Crystallography (MX) manager at Protein Science Facility, ̽ѡ. I am organizing the local structural biology community to share synchrotron beamtime, crystallization robot hardware and remotely accessible diffraction data analysis software to achieve common goals and stay competitive in an international environment.

    I am coordinating three synchrotron “block allocation groups” at Diamond Light Source in Oxfordshire and MAX IV in Lund in benefit of seventeen research groups at KI, SU, UU, KTH and LiU resulting in shared beamtime for Macromolecular X-ray diffraction experiments. 

    I am also heading a team developing a High-Performance Computing integrated structural biology software installation called available to Swedish academics at NSC Tetralith, NSC Berzelius, LUNARC Cosmos and the MAX IV cluster.

    In recent years local researchers have asked for MX services developing crystal systems for ligand and fragment-based screening.  PSF have access to FragMAX project at MAX IV and XChem facilities at Diamond Light Source upon request from the Swedish research community.

     

Research

  • I am happy to collaborate with researchers that want to apply macromolecular X-ray crystallography to their research (1-5). I was the assistant supervisor of Madhanagopal Anandapadamanaban (6-8) that defended his thesis in December 2015.

     

    1. Sandalova T, Sala BM, Moche M, Ljunggren H-G, Alici E, Henriques-Normark B, Agback T, Lesovoy D, Agback P, Achour A. Crystallographic and NMR studies of Streptococcus pneumonia LCP protein PsrSp indicate the importance of dynamics in four long loops for ligand specificity. bioRxiv. 2024:2024.10.21.619401:10.1101/2024.10.21.619401.

    2. Jungholm O, Trkulja C, Moche M, Srinivasa SP, Christakopoulou MN, Davidson M, Reymer A, Jardemark K, Fogaca RL, Ashok A, Jeffries G, Ampah-Korsah H, Strandback E, Andrell J, Nyman T, Nouairia G, Orwar O. Novel druggable space in human KRAS G13D discovered using structural bioinformatics and a P-loop targeting monoclonal antibody. Sci Rep. 2024, 14(1):19656:10.1038/s41598-024-70217-9.

    3. Akaberi D, Pourghasemi Lati M, Krambrich J, Berger J, Neilsen G, Strandback E, Turunen SP, Wannberg J, Gullberg H, Moche M, Chinthakindi PK, Nyman T, Sarafianos SG, Sandstrom A, Jarhult JD, Sandberg K, Lundkvist A, Verho O, Lennerstrand J. Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries. Antimicrob Agents Chemother. 2024:e0090924:10.1128/aac.00909-24.

    4. Combined x-ray crystallography and computational modeling approach to investigate the Hsp90 C-terminal peptide binding to FKBP51. Kumar R, Moche M, Winblad B, Pavlov PF. Sci Rep 2017 10, 7(1):14288

    5. Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides. Ducani C, Kaul C, Moche M, Shih WM, Högberg B. Nat Methods 2013 Jul, 10(7):647-52

    6. High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation. Anandapadamanaban M, Andresen C, Helander S, Ohyama Y, Siponen MI, Lundström P, Kokubo T, Ikura M, Moche M, Sunnerhagen M Nat Struct Mol Biol 2013 Aug, 20(8):1008-14.

    7. Mutation-Induced Population Shift in the MexR Conformational Ensemble Disengages DNA Binding: A Novel Mechanism for MarR Family Derepression. Anandapadamanaban M, Pilstål R, Andresen C, Trewhella J, Moche M, Wallner B, Sunnerhagen M. Structure 2016 08, 24(8):1311-1321

    8. E3 ubiquitin-protein ligase TRIM21-mediated lysine capture by UBE2E1 reveals substrate-targeting mode of a ubiquitin-conjugating E2. Anandapadamanaban M, Kyriakidis NC, Csizmók V, Wallenhammar A, Espinosa AC, Ahlner A, Round AR, Trewhella J, Moche M, Wahren-Herlenius M, Sunnerhagen M J Biol Chem 2019 07, 294(30):11404-11419

     

     

Teaching

  • I am usually teaching first and second year ̽ѡ and bio̽ѡ students in fundamental concepts regarding protein, lipid and carbohydrate structure and function vitamins and cofactors energy metabolism such as glycolysis, TCA cycle and oxidative phosphorylation and impact of diabetes on insulin/glucagon regulation on gluconeogenesis, glycogenolysis and glycogen synthesis. I am also teaching about chemical bonding in organic chemistry.

Articles

  • Journal article: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 2024;68(10):e0090924-e00924
    Akaberi D; Lati MP; Krambrich J; Berger J; Neilsen G; Strandback E; Turunen SP; Wannberg J; Gullberg H; Moche M; Chinthakindi PK; Nyman T; Sarafianos SG; Sandstrom A; Jarhult JD; Sandberg K; Lundkvist A; Verho O; Lennerstrand J
  • Article: SCIENTIFIC REPORTS. 2024;14(1):19656
    Jungholm O; Trkulja C; Moche M; Srinivasa SP; Christakopoulou M-N; Davidson M; Reymer A; Jardemark K; Fogaca RL; Ashok A; Jeffries G; Ampah-Korsah H; Strandback E; Andrell J; Nyman T; Nouairia G; Orwar O
  • Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2019;294(30):11404-11419
    Anandapadamanaban M; Kyriakidis NC; Csizmok V; Wallenhammar A; Espinosa AC; Ahlner A; Round AR; Trewhella J; Moche M; Wahren-Herlenius M; Sunnerhagen M
  • Journal article: JOURNAL OF MEDICINAL CHEMISTRY. 2019;62(12):5922
    Thorsen A-G; Ekblad T; Karlberg T; Low M; Pinto AF; Tresaugues L; Moche M; Cohen MS; Schuler H
  • Article: SCIENTIFIC REPORTS. 2017;7(1):14288
    Kumar R; Moche M; Winblad B; Pavlov PF
  • Article: JOURNAL OF MEDICINAL CHEMISTRY. 2017;60(4):1262-1271
    Thorsell A-G; Ekblad T; Karlberg T; Low M; Pinto AF; Tresaugues L; Moche M; Cohen MS; Schuler H
  • Article: STRUCTURE. 2016;24(8):1311-1321
    Anandapadamanaban M; Pilstal R; Andresen C; Trewhella J; Moche M; Wallner B; Sunnerhagen M
  • Article: PLANT PHYSIOLOGY. 2015;169(1):432-441
    Liu Q; Chai J; Moche M; Guy J; Lindqvist Y; Shanklin J
  • Article: NATURE STRUCTURAL & MOLECULAR BIOLOGY. 2013;20(8):1008-1014
    Anandapadamanaban M; Andresen C; Helander S; Ohyama Y; Siponen MI; Lundstrom P; Kokubo T; Ikura M; Moche M; Sunnerhagen M
  • Article: NATURE METHODS. 2013;10(7):647-652
    Ducani C; Kaul C; Moche M; Shih WM; Hogberg B
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2011;108(40):16594-16599
    Guy JE; Whittle E; Moche M; Lengqvist J; Lindqvist Y; Shanklin J
  • Article: PLOS ONE. 2010;5(9):e12791
    Schutz P; Karlberg T; van den Berg S; Collins R; Lehtio L; Hogbom M; Holmberg-Schiavone L; Tempel W; Park H-W; Hammarstrom M; Moche M; Thorsell A-G; Schuler H
  • Article: PLOS ONE. 2010;5(1):e8625
    Wisniewska M; Karlberg T; Lehtio L; Johansson I; Kotenyova T; Moche M; Schuler H
  • Article: ACTA CRYSTALLOGRAPHICA SECTION F: STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS. 2009;65(Pt 11):1091-1096
    Herman MD; Moche M; Flodin S; Welin M; Tresaugues L; Johansson I; Nilsson M; Nordlund P; Nyman T
  • Article: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2008;73(4):1047-1052
    Tresaugues L; Stenmark P; Schuler H; Flodin S; Welin M; Nyman T; Hammarstrom M; Moche M; Graslund S; Nordlund P
  • Article: JOURNAL OF MOLECULAR BIOLOGY. 2007;373(1):48-64
    Stenmark P; Moche M; Gurmu D; Nordlund P
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006;103(46):17220-17224
    Guy JE; Abreu IA; Moche M; Lindqvist Y; Whittle E; Shanklin J
  • Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2003;278(27):25072-25080
    Moche M; Shanklin J; Ghoshal A; Lindqvist Y
  • Article: JOURNAL OF MOLECULAR BIOLOGY. 2001;305(3):491-503
    Moche M; Dehesh K; Edwards P; Lindqvist Y
  • Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 1999;274(10):6031-6034
    Moche M; Schneider G; Edwards P; Dehesh K; Lindqvist Y

All other publications

  • Preprint: BIORXIV. 2024
    Sandalova T; Sala BM; Moche M; Ljunggren H-G; Alici E; Henriques-Normark B; Agback T; Lesovoy D; Agback P; Achour A
  • Preprint: BIORXIV. 2024
    Akaberi D; Lati MP; Krambrich J; Berger J; Neilsen G; Strandback E; Turunen SP; Wannberg J; Gullberg H; Moche M; Chinthakindi PK; Nyman T; Sarafianos SG; Sandström A; Järhult JD; Sandberg K; Lundkvist Å; Verho O; Lennerstrand J
  • Conference publication: FASEB JOURNAL. 2015;29
    Schuler H; Thorsell A-G; Ekblad T; Karlberg T; Klepsch M; Pinto A; Tresaugues L; Moche M
  • Doctoral thesis: 2003
    Moche M

Grants

  • Swedish Research Council
    1 November 2018 - 31 December 2021

Employments

  • Senior Research Infrastructure Specialist, Department of Medical Biochemistry and Biophysics, ̽ѡ, 2023-
  • Application Expert, Structural biology software, National Supercomputer Centre, Linköping University, 2016-2018

Degrees and Education

  • Doctor Of Philosophy, Department of Medical Biochemistry and Biophysics, ̽ѡ, 2003

Leadership and responsibility assignments

  • SNIC coordinator at ̽ѡ, Connect Life Science to High Performance Compute environments, Medical Biochemistry and Biophysics, ̽ѡ, , 2019-2021

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