探花精选

Indranil Sinha

Indranil Sinha

Research Specialist
Visiting address: Alfred Nobels alle 8, 14183 Huddinge
Postal address: H5 Laboratoriemedicin, H5 Klin Mikrobiologi Ujjwal Neogi, 141 52 Huddinge

About me

  • I received my PhD from Karolinska Institute in the field of Epigenetics and Bioinformatics under the supervision of Professor Karl Ekwall.

    My first postdoctoral research was conducted at the Department of Molecular Biochemistry and Biophysics, under the guidance of Professor Sten Linnarsson and Professor Patrik Ernfors. During this period, I was involved in analyzing high-throughput sequencing data, including RNA-seq, miRNA, and single-cell RNA sequencing.

    For my second postdoctoral position, I worked at the Department of Biosciences and Nutrition in the Estrogen Signaling Research Group, led by Professor Karin Dahlman-Wright.

    After completing my postdoctoral research, I spent several years as a Senior Bioinformatics Researcher at the Department of Biosciences and Nutrition, KI; the Childhood Cancer Research Unit at the Department of Women's and Children's Health, KI, and the Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University.

    Currently, I am working as a Senior Bioinformatics Research Specialist at The Systems Virology Lab, Department of Laboratory Medicine, KI. In this role, I am responsible for overseeing the data management plan and bioinformatics analysis for the EU-funded COMBAT project, an initiative aimed at combating the global dengue epidemic.

Research

  • My current research focuses are on bioinformatics analysis in virology, particularly in data management and bioinformatics analysis for the EU-funded COMBAT project aimed at combating the global dengue epidemic.

    Additionally, I have expertise in epigenetics, single-cell sequencing, RNA-seq, and childhood cancer research, with a broader interest in tumor heterogeneity and genomic evolution.



Teaching

  • 路         Involved in teaching for a PhD course (2022) titled "*Translational Paediatric Oncology in the Era of Immunotherapy and Omics *". ()

    路         Involved in teaching for a Bachelors course (2016 - 2024) titled 鈥淕enetics, genomics and functional genomics鈥.

    路         Involved in teaching for a PhD course (2013 - 2019) titled 鈥淗igh throughput functional genomic technologies in bio探花精选 research鈥. ()

    路         Organized a course for PhD students and post-docs at 探花精选, titled 鈥淎 combination of in vivo and in silico methods to determine genome-wide protein targets鈥 in 2014. ()

    路         Worked as a teaching assistant (part time) in S枚dert枚rns H枚gskola, Huddinge, Sweden (2004 - 2010). The job responsibility was to design and teach Bioinformatics and proteomics for master鈥檚 level courses.

    路         Co-supervised a PhD student who graduated recently as well as co-supervised several masters鈥 students.

Articles

  • Article: EXPERIMENTAL HEMATOLOGY. 2025;:104712
    Ramilo Amor A; Enlund S; Sinha I; Jiang Q; Hermanson O; Nilsson A; Shirazi Fard S; Holm F
  • Article: EXPERIMENTAL CELL RESEARCH. 2024;437(2):114015
    Enlund S; Sinha I; Neofytou C; Amor AR; Papadakis K; Nilsson A; Jiang Q; Hermanson O; Holm F
  • Article: NATURE COMMUNICATIONS. 2024;15(1):1752
    Kvedaraite E; Lourda M; Mouratidou N; Duking T; Padhi A; Moll K; Czarnewski P; Sinha I; Xagoraris I; Kokkinou E; Damdimopoulos A; Weigel W; Hartwig O; Santos TE; Soini T; Van Acker A; Rahkonen N; Tullberg MF; Ringqvist E; Buggert M; Jorns C; Lindforss U; Nordenvall C; Stamper CT; Unnersjoe-Jess D; Akber M; Nadisauskaite R; Jansson J; Vandamme N; Sorini C; Grundeken ME; Rolandsdotter H; Rassidakis G; Villablanca EJ; Idestroem M; Eulitz S; Arnell H; Mjoesberg J; Henter J-I; Svensson M
  • Article: NEURO-ONCOLOGY ADVANCES. 2024;6(1):vdae172
    Ruchiy Y; Tsea I; Preka E; Verhoeven BM; Olsen TK; Mei S; Sinha I; Blomgren K; Carlson L-M; Dyberg C; Johnsen JI; Baryawno N
  • Article: CHILDREN-BASEL. 2023;10(6):966
    Aasa J; Tiselius E; Sinha I; Edman G; Wahlund M; Hedengren SS; Nilsson A; Berggren A
  • Article: EJHAEM. 2023;4(1):115-124
    Enlund S; Sinha I; Amor AR; Fard SS; Tamm EP; Jiang Q; Lundin V; Nilsson A; Holm F
  • Article: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 2023;11:1060537
    Basu J; Madhulika S; Murmu KC; Mohanty S; Samal P; Das A; Mahapatra S; Saha S; Sinha I; Prasad P
  • Article: FRONTIERS IN ENDOCRINOLOGY. 2022;13:930227
    Song D; He H; Indukuri R; Huang Z; Stepanauskaite L; Sinha I; Haldosen L-A; Zhao C; Williams C
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021;118(40):e2109123118
    Lourda M; Dzidic M; Hertwig L; Bergsten H; Medina LMP; Sinha I; Kvedaraite E; Chen P; Muvva JR; Gorin J-B; Cornillet M; Emgard J; Moll K; Garcia M; Maleki KT; Klingstrom J; Michaelsson J; Flodstrom-Tullberg M; Brighenti S; Buggert M; Mjosberg J; Malmberg K-J; Sandberg JK; Henter J-I; Folkesson E; Gredmark-Russ S; Sonnerborg A; Eriksson LI; Rooyackers O; Aleman S; Stralin K; Ljunggren H-G; Bjorkstrom NK; Svensson M; Ponzetta A; Norrby-Teglund A; Chambers BJ
  • Article: ANTIOXIDANTS. 2021;10(7):1070
    Dallner G; Bentinger M; Hussain S; Sinha I; Yang J; Schwank-Xu C; Zheng X; Swiezewska E; Brismar K; Valladolid-Acebes I; Tekle M
  • Article: CANCER LETTERS. 2021;506:23-34
    Song D; He H; Sinha I; Hases L; Yan F; Archer A; Haldosen L-A; Zhao C; Williams C
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021;118(6):e2018587118
    Kvedaraite E; Hertwig L; Sinha I; Ponzetta A; Myrberg IH; Lourda M; Dzidic M; Akber M; Klingstrom J; Folkesson E; Muvva JR; Chen P; Gredmark-Russ S; Brighenti S; Norrby-Teglund A; Eriksson LI; Rooyackers O; Aleman S; Stralin K; Ljunggren H-G; Ginhoux F; Bjorkstrom NK; Henter J-I; Svensson M
  • Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020;21(15):5305
    Wahlund M; Sinha I; Broliden K; Saghafian-Hedengren S; Nilsson A; Berggren A
  • Article: CELL REPORTS. 2020;31(5):107601
    Toledo EM; Yang S; Gyllborg D; van Wijk KE; Sinha I; Varas-Godoy M; Grigsby CL; Lonnerberg P; Islam S; Steffensen KR; Linnarsson S; Arenas E
  • Article: MOLECULAR METABOLISM. 2019;25:159-167
    Kerr AG; Sinha I; Dadvar S; Arner P; Dahlman I
  • Article: ONCOGENE. 2019;38(28):5725-5738
    He H; Song D; Sinha I; Hessling B; Li X; Haldosen L-A; Zhao C
  • Article: ONCOGENE. 2018;37(19):2586-2600
    He H; Sinha I; Fan R; Haldosen L-A; Yan F; Zhao C; Dahlman-Wright K
  • Article: SCIENTIFIC REPORTS. 2017;7(1):10152
    Bialesova L; Kulyte A; Petrus P; Sinha I; Laurencikiene J; Zhao C; Wright KD; Arner P; Dahlman I
  • Article: DIABETOLOGIA. 2016;59(11):2393-2405
    Arner P; Sahlqvist A-S; Sinha I; Xu H; Yao X; Waterworth D; Rajpal D; Loomis AK; Freudenberg JM; Johnson T; Thorell A; Naslund E; Ryden M; Dahlman I
  • Article: CANCER RESEARCH. 2016;76(19):5634-5646
    Jia M; Andreassen T; Jensen L; Bathen TF; Sinha I; Gao H; Zhao C; Haldosen L-A; Cao Y; Girnita L; Moestue SA; Dahlman-Wright K
  • Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(29):15169-15184
    Martinez-Redondo V; Jannig PR; Correia JC; Ferreira DMS; Cervenka I; Lindvall JM; Sinha I; Izadi M; Pettersson-Klein AT; Agudelo LZ; Gimenez-Cassina A; Brum PC; Dahlman-Wright K; Ruas JL
  • Article: ONCOGENE. 2016;35(15):1955-1964
    Zhu J; Zhao C; Zhuang T; Jonsson P; Sinha I; Williams C; Stromblad S; Dahlman-Wright K
  • Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(10):5068-5079
    Qiao Y; He H; Jonsson P; Sinha I; Zhao C; Dahlman-Wright K
  • Article: MOLECULAR METABOLISM. 2016;5(3):171-183
    Kirchner H; Sinha I; Gao H; Ruby MA; Schonke M; Lindvall JM; Barres R; Krook A; Naslund E; Dahlman-Wright K; Zierath JR
  • Article: SCIENTIFIC REPORTS. 2016;6:18617
    Wang Y; Fisahn A; Sinha I; Nguyen DP; Sterzenbach U; Lallemend F; Hadjab S
  • Article: OBESITY. 2016;24(1):250-261
    Berglind D; Muller P; Willmer M; Sinha I; Tynelius P; Naslund E; Dahlman-Wright K; Rasmussen F
  • Article: MOLECULAR METABOLISM. 2015;4(12):891-902
    Correia JC; Massart J; de Boer JF; Porsmyr-Palmertz M; Martinez-Redondo V; Agudelo LZ; Sinha I; Meierhofer D; Ribeiro V; Bjornholm M; Sauer S; Dahlman-Wright K; Zierath JR; Groen AK; Ruas JL
  • Article: INTERNATIONAL JOURNAL OF OBESITY. 2015;39(6):910-919
    Dahlman I; Sinha I; Gao H; Brodin D; Thorell A; Ryden M; Andersson DP; Henriksson J; Perfilyev A; Ling C; Dahlman-Wright K; Arner P
  • Article: GENOME RESEARCH. 2015;25(6):872-883
    Svensson JP; Shukla M; Menendez-Benito V; Norman-Axelsson U; Audergon P; Sinha I; Tanny JC; Allshire RC; Ekwall K
  • Article: CLINICAL EPIGENETICS. 2015;7(1):93
    Arner P; Sinha I; Thorell A; Ryden M; Dahlman-Wright K; Dahlman I
  • Article: CANCER RESEARCH. 2014;74(14):3983-3994
    Zhao C; Qiao Y; Jonsson P; Wang J; Xu L; Rouhi P; Sinha I; Cao Y; Williams C; Dahlman-Wright K
  • Article: PLOS ONE. 2013;8(8):e72409
    Abdelhady S; Kitambi SS; Lundin V; Aufschnaiter R; Sekyrova P; Sinha I; Lundgren KT; Castelo-Branco G; Linnarsson S; Wedlich-Soeldner R; Teixeira A; Andang M
  • Article: EMBO JOURNAL. 2012;31(18):3718-3729
    Lallemend F; Sterzenbach U; Hadjab-Lallemend S; Aquino JB; Castelo-Branco G; Sinha I; Villaescusa JC; Levanon D; Wang Y; Franck MCM; Kharchenko O; Adameyko I; Linnarsson S; Groner Y; Turner E; Ernfors P
  • Article: EPIGENOMICS. 2010;2(3):377-393
    Sinha I; Buchanan L; Roennerblad M; Bonilla C; Durand-Dubief M; Shevchenko A; Grunstein M; Stewart AF; Ekwall K
  • Article: EMBO JOURNAL. 2007;26(10):2477-2488
    Durand-Dubief M; Sinha I; Fagerstroem-Billai F; Bonilla C; Wright A; Grunstein M; Ekwall K
  • Article: MOLECULAR CELL. 2006;22(2):169-178
    Zhu XF; Wir茅n M; Sinha I; Rasmussen NN; Linder T; Holmberg S; Ekwall K; Gustafsson CM
  • Article: CHROMOSOME RESEARCH. 2006;14(1):95-105
    Sinha I; Wir茅n M; Ekwall K
  • Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2005;334(4):1149-1158
    Singh V; Sinha I; Sadhale PP
  • Article: EMBO JOURNAL. 2005;24(16):2906-2918
    Wir茅n M; Silverstein RA; Sinha I; Walfridsson J; Lee HM; Laurenson P; Pillus L; Robyr D; Grunstein M; Ekwall K
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All other publications

  • Preprint: BIORXIV. 2024
    Amor AR; Enlund S; Sinha I; Jiang Q; Hermanson O; Nilsson A; Shirazi Fard S; Holm F
  • Conference publication: NEURO-ONCOLOGY. 2023;25:i62
    Ruchiy Y; Tsea I; Verhoeven BM; Sinha I; Preka E; Olsen TK; Mei S; Blomgren K; Johnsen JI; Carlson L-M; Dyberg C; Baryawno N
  • Conference publication: CANCER RESEARCH. 2022;82(12)
    Tsea I; Ruchiy Y; Verhoeven M; Sinha I; Blomgren K; Carlson LM; Johnsen JI; Dyberg C; Baryawno N
  • Conference publication: CANCER RESEARCH. 2020;80(16):4085
    Song D; He H; Sinha I; Pettersson L; Yan F; Haldosen L-A; Zhao C; Williams C
  • Published conference paper: BRITISH JOURNAL OF SURGERY. 2019;106(5):563-573
    Lindegren A; Schultz I; Sinha I; Cheung L; Khan AA; Tekle M; Wickman M; Halle M
  • Corrigendum: DIABETOLOGIA. 2016;59(12):2728
    Arner P; Sahlqvist A-S; Sinha I; Xu H; Yao X; Waterworth D; Rajpal D; Loomis AK; Freudenberg JM; Johnson T; Thorell A; Naslund E; Ryden M; Dahlman I
  • Doctoral thesis: 2010
    Sinha I

Employments

  • Research Specialist, Department of Laboratory Medicine, 探花精选, 2025-
  • Bioinformatician, Department of Women's and Children's Health, 探花精选, 2020-2024

Degrees and Education

  • Degree Of Doctor Of Philosophy, Department of Biosciences and Nutrition, 探花精选, 2010

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