Indranil Sinha
About me
I received my PhD from Karolinska Institute in the field of Epigenetics and Bioinformatics under the supervision of Professor Karl Ekwall.
My first postdoctoral research was conducted at the Department of Molecular Biochemistry and Biophysics, under the guidance of Professor Sten Linnarsson and Professor Patrik Ernfors. During this period, I was involved in analyzing high-throughput sequencing data, including RNA-seq, miRNA, and single-cell RNA sequencing.
For my second postdoctoral position, I worked at the Department of Biosciences and Nutrition in the Estrogen Signaling Research Group, led by Professor Karin Dahlman-Wright.
After completing my postdoctoral research, I spent several years as a Senior Bioinformatics Researcher at the Department of Biosciences and Nutrition, KI; the Childhood Cancer Research Unit at the Department of Women's and Children's Health, KI, and the Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University.
Currently, I am working as a Senior Bioinformatics Research Specialist at The Systems Virology Lab, Department of Laboratory Medicine, KI. In this role, I am responsible for overseeing the data management plan and bioinformatics analysis for the EU-funded COMBAT project, an initiative aimed at combating the global dengue epidemic.
Research
My current research focuses are on bioinformatics analysis in virology, particularly in data management and bioinformatics analysis for the EU-funded COMBAT project aimed at combating the global dengue epidemic.
Additionally, I have expertise in epigenetics, single-cell sequencing, RNA-seq, and childhood cancer research, with a broader interest in tumor heterogeneity and genomic evolution.
Teaching
路 Involved in teaching for a PhD course (2022) titled "*Translational Paediatric Oncology in the Era of Immunotherapy and Omics *". ()
路 Involved in teaching for a Bachelors course (2016 - 2024) titled 鈥淕enetics, genomics and functional genomics鈥.
路 Involved in teaching for a PhD course (2013 - 2019) titled 鈥淗igh throughput functional genomic technologies in bio探花精选 research鈥. ()
路 Organized a course for PhD students and post-docs at 探花精选, titled 鈥淎 combination of in vivo and in silico methods to determine genome-wide protein targets鈥 in 2014. ()
路 Worked as a teaching assistant (part time) in S枚dert枚rns H枚gskola, Huddinge, Sweden (2004 - 2010). The job responsibility was to design and teach Bioinformatics and proteomics for master鈥檚 level courses.
路 Co-supervised a PhD student who graduated recently as well as co-supervised several masters鈥 students.
Articles
- Article: EXPERIMENTAL HEMATOLOGY. 2025;:104712
- Article: EXPERIMENTAL CELL RESEARCH. 2024;437(2):114015
- Article: NATURE COMMUNICATIONS. 2024;15(1):1752
- Article: NEURO-ONCOLOGY ADVANCES. 2024;6(1):vdae172
- Article: CHILDREN-BASEL. 2023;10(6):966
- Article: EJHAEM. 2023;4(1):115-124
- Article: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 2023;11:1060537
- Article: FRONTIERS IN ENDOCRINOLOGY. 2022;13:930227
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021;118(40):e2109123118
- Article: ANTIOXIDANTS. 2021;10(7):1070
- Article: CANCER LETTERS. 2021;506:23-34
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021;118(6):e2018587118
- Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020;21(15):5305
- Article: CELL REPORTS. 2020;31(5):107601
- Article: MOLECULAR METABOLISM. 2019;25:159-167
- Article: ONCOGENE. 2019;38(28):5725-5738
- Article: ONCOGENE. 2018;37(19):2586-2600
- Article: SCIENTIFIC REPORTS. 2017;7(1):10152
- Article: DIABETOLOGIA. 2016;59(11):2393-2405
- Article: CANCER RESEARCH. 2016;76(19):5634-5646
- Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(29):15169-15184
- Article: ONCOGENE. 2016;35(15):1955-1964
- Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(10):5068-5079
- Article: MOLECULAR METABOLISM. 2016;5(3):171-183
- Article: SCIENTIFIC REPORTS. 2016;6:18617
- Article: OBESITY. 2016;24(1):250-261
- Article: MOLECULAR METABOLISM. 2015;4(12):891-902
- Article: INTERNATIONAL JOURNAL OF OBESITY. 2015;39(6):910-919
- Article: GENOME RESEARCH. 2015;25(6):872-883
- Article: CLINICAL EPIGENETICS. 2015;7(1):93
- Article: CANCER RESEARCH. 2014;74(14):3983-3994
- Article: PLOS ONE. 2013;8(8):e72409
- Article: EMBO JOURNAL. 2012;31(18):3718-3729
- Article: EPIGENOMICS. 2010;2(3):377-393
- Article: EMBO JOURNAL. 2007;26(10):2477-2488
- Article: MOLECULAR CELL. 2006;22(2):169-178
- Article: CHROMOSOME RESEARCH. 2006;14(1):95-105
- Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2005;334(4):1149-1158
- Article: EMBO JOURNAL. 2005;24(16):2906-2918
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All other publications
- Preprint: BIORXIV. 2024
- Conference publication: NEURO-ONCOLOGY. 2023;25:i62
- Conference publication: CANCER RESEARCH. 2022;82(12)
- Conference publication: CANCER RESEARCH. 2020;80(16):4085
- Published conference paper: BRITISH JOURNAL OF SURGERY. 2019;106(5):563-573
- Corrigendum: DIABETOLOGIA. 2016;59(12):2728
- Doctoral thesis: 2010
Employments
- Research Specialist, Department of Laboratory Medicine, 探花精选, 2025-
- Bioinformatician, Department of Women's and Children's Health, 探花精选, 2020-2024
Degrees and Education
- Degree Of Doctor Of Philosophy, Department of Biosciences and Nutrition, 探花精选, 2010