Haris Baba膷i膰
About me
I am a postdoctoral researcher in cancer proteomics, with background in medicine and epidemiology. I defended my PhD thesis at the Karolinska Institute in 2023, on . I am skilled in proteomics, proteogenomics, research design, 探花精选 statistics, machine learning, and bioinformatics.
Research
My research has two aims:
1) Discovering protein biomarkers for predicting clinical outcomes, such as treatment response, progression, or survival. Our aim is to connect proteomic data to other data modalities for the aim of stratifying cancer patients, to improve clinical decision-making in patient management, primarily in treatment management. I am focused on three highly malignant cancers - glioblastoma, lung cancer, and melanoma and work mainly on plasma proteomics, i.e. analysing hundreds or thousands of proteins that are freely circulating in the liquid component of the blood called plasma.
2) Translating discovery proteomic findings to the clinic. Our aim is to build a clinical proteomics infrastructure for testing and validating new protein biomarkers, for the final goal of integrating research findings in clinical routine.
Teaching
- Director and examiner for the KI PhD course K7F3120 in Omics Data Analysis: From Quantitative Data to Biological Information.
- Teaching experimental design and data analysis, KI PhD course K7F255 in Proteomics by Mass Spectrometry: When and How.
Articles
- Article: NATURE COMMUNICATIONS. 2023;14(1):5921
- Article: RESPIRATORY RESEARCH. 2023;24(1):62
- Article: MOLECULAR ONCOLOGY. 2023;17(2):238-260
- Article: NEOPLASIA: AN INTERNATIONAL JOURNAL FOR ONCOLOGY RESEARCH. 2021;23(8):783-791
- Article: JOURNAL FOR IMMUNOTHERAPY OF CANCER. 2020;8(1):e000204
- Article: JOURNAL OF NEUROLOGY. 2019;266(6):1358-1366
- Article: JOURNAL OF NEUROLOGY. 2019;266(1):133-147
- Article: JOURNAL OF NEUROMUSCULAR DISEASES. 2018;5(4):451-459
- Article: MULTIPLE SCLEROSIS AND RELATED DISORDERS. 2018;25:112-121
- Article: NEUROMUSCULAR DISORDERS. 2018;28(3):229-235
All other publications
- Thesis / dissertation: 2023
- Preprint: BIORXIV. 2022
- Letter: ALLERGY. EUROPEAN JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2022;77(1):296-298
- Meeting abstract: ANNALS OF ONCOLOGY. 2020;31:S760
- Preprint: MEDRXIV. 2020
- Meeting abstract: JOURNAL OF CLINICAL ONCOLOGY. 2019;37(15):9574
- Conference publication: NERVENHEILKUNDE. 2019;38(05):286-287
- Review: PLOS ONE. 2019;14(2):e0212198
- Conference publication: NEUROMUSCULAR DISORDERS. 2018;28:S137
Employments
- Postdoctoral Researcher, Department of Oncology-Pathology, 探花精选, 2023-2025
Degrees and Education
- Degree Of Doctor Of Philosophy, Department of Oncology-Pathology, 探花精选, 2023
- Master of Science in Epidemiology, Institute for Medical Information Processing, Biometry, and Epidemiology, Ludwig-Maximilians-Universit盲t M眉nchen, 2017
- Doctor of Medicine, Faculty of Medicine, Saints Cyril and Methodius University of Skopje, 2015