̽ѡ

Carsten Daub

Carsten Daub

Principal Researcher | Docent
Telephone: +46852481224
Visiting address: Blickagången 16, 14152 Flemingsberg
Postal address: H7 Medicin, Huddinge, H7 BioNut Daub, 171 77 Stockholm
Part of:

About me

  • I am an Associate Professor (“Docent” in the Swedish academic system) and
    group leader for the Clinical Transcriptomics research group [1] at the
    Department of Biosciences and Nutrition at ̽ѡ. My
    educational background is in Chemistry (Masters in 2000 at Technical
    University Berlin) and Bioinformatics (PhD in 2004 at Max-Planck-Institute in
    Golm). I spent two years as postdoc with Erik Sonnhammer at Karolinska
    Institutet 2004-2006 after which I went to work with Yoshihide Hayashizaki at
    RIKEN Yokohama. In 2007 I became Team Leader at RIKEN Omics Science Center
    (OSC) and was also leading the Bioinformatics Core Facility at RIKEN OSC as
    Facility Director since 2008. In 2012, I moved back to ̽ѡ
    to lead the Clinical Transcriptomics research group to improve the
    understanding of gene regulation underlying diseases.
    [1]

Research

  • *Publication summary*
    Total number of peer-reviewed publications: 56, first author: 4, last
    author: 13
    H-index: 30 (Google scholar)
    Total number of citations: >
  • 4000 (Google scholar)

Teaching

  • *Supervision*
    /Ongoing/
    Since 2014, Niyaz Yoosuf, postdoc
    Since 2015, Enrichetta Mileti, PhD student
    Since 2015, Tahmina Akhter, PhD student
    Since 2015, Abdul Kadir Mukarram, PhD student (to be registered 2015-11-30)
    Since 2015, Matthias Hörtenhuber, PhD student (to be registered 2015-11-30)
    /Completed/
    2012-2014, Olga Hrydziuszko, postdoc
    2012-2014, Nancy Yu, postdoc
    2012-2013, Andrew Kwon, postdoc, RIKEN Yokohama
    2011-2013, Jordan Ramilowski, postdoc, RIKEN Yokohama
    2009-2011, Max Burroughs, postdoc, RIKEN Yokohama
    2009-2013 Morana Vitezic, ̽ѡ PhD student with Carsten Daub
    as main supervisor, working at RIKEN Yokohama, financed by RIKEN IPA
    program

Articles

  • Article: NATURE COMMUNICATIONS. 2024;15(1):9082
    DoGA Consortium
  • Article: HELIYON. 2024;10(14):e34386
    Akhter T; Mileti E; Kere MM; Kolmert J; Konradsen JR; Hedlin G; Melen E; Daub CO
  • Article: ISCIENCE. 2024;27(1):108638
    Emanuelsson EB; Arif M; Reitzner SM; Perez S; Lindholm ME; Mardinoglu A; Daub C; Sundberg CJ; Chapman MA
  • Article: SCIENTIFIC REPORTS. 2023;13(1):10519
    Arora A; Becker M; Marques C; Oksanen M; Li D; Mastropasqua F; Watts ME; Arora M; Falk A; Daub CO; Lanekoff I; Tammimies K
  • Article: NATURE GENETICS. 2022;54(7):1037-1050
    Baranasic D; Hortenhuber M; Balwierz PJ; Zehnder T; Mukarram AK; Nepal C; Varnai C; Hadzhiev Y; Jimenez-Gonzalez A; Li N; Wragg J; D'Orazio FM; Relic D; Pachkov M; Diaz N; Hernandez-Rodriguez B; Chen Z; Stoiber M; Dong M; Stevens I; Ross SE; Eagle A; Martin R; Obasaju O; Rastegar S; McGarvey AC; Kopp W; Chambers E; Wang D; Kim HR; Acemel RD; Naranjo S; Lapinski M; Chong V; Mathavan S; Peers B; Sauka-Spengler T; Vingron M; Carninci P; Ohler U; Lacadie SA; Burgess SM; Winata C; van Eeden F; Vaquerizas JM; Luis Gomez-Skarmeta J; Onichtchouk D; Brown BJ; Bogdanovic O; van Nimwegen E; Westerfield M; Wardle FC; Daub CO; Lenhard B; Muller F
  • Article: NATURE GENETICS. 2022;54(3):283-294
    Sahu B; Hartonen T; Pihlajamaa P; Wei B; Dave K; Zhu F; Kaasinen E; Lidschreiber K; Lidschreiber M; Daub CO; Cramer P; Kivioja T; Taipale J
  • Article: STAR PROTOCOLS. 2021;2(4):100995
    Ezer S; Yoshihara M; Katayama S; DoGA Consortium C; Daub C; Lohi H; Krjutskov K; Kere J
  • Article: DIABETES. 2021;70(7):1486-1497
    Mileti E; Kwok KHM; Andersson DP; Mathelier A; Raman A; Backdahl J; Jalkanen J; Massier L; Thorell A; Gao H; Arner P; Mejhert N; Daub CO; Ryden M
  • Article: MOLECULAR HUMAN REPRODUCTION. 2021;27(6):gaab035
    Corral-Vazquez C; Blanco J; Cigliano RA; Sarrate Z; Rivera-Egea R; Vidal F; Garrido N; Daub C; Anton E
  • Article: PLOS ONE. 2021;16(4):e0250582
    Chireh A; Grankvist R; Sandell M; Mukarram AK; Arnberg F; Lundberg J; Daub CO; Holmin S
  • Article: SCIENTIFIC REPORTS. 2020;10(1):8029
    Grankvist R; Chireh A; Sandell M; Mukarram AK; Jaff N; Berggren I; Persson H; Linde C; Arnberg F; Lundberg J; Ugander M; La Manno G; Jonsson S; Daub CO; Holmin S
  • Article: GIGASCIENCE. 2020;9(3):giaa024
    Hortenhuber M; Mukarram AK; Stoiber MH; Brown JB; Daub CO
  • Article: PLOS GENETICS. 2020;16(3):e1008659
    Kaukonen M; Quintero IB; Mukarram AK; Hytonen MK; Holopainen S; Wickstrom K; Kyostila K; Arumilli M; Jalomaki S; Daub CO; Kere J; Lohi H
  • Article: BREAST CANCER RESEARCH. 2020;22(1):6
    Yoosuf N; Navarro JF; Salmen F; Stahl PL; Daub CO
  • Article: BMC GENOMICS. 2019;20(1):718
    Ha TJ; Zhang PGY; Robert R; Yeung J; Swanson DJ; Mathelier A; Wasserman WW; Im S; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; FANTOM Consortium; Carninci P; Hayashizaki Y; Forrest ARR; Goldowitz D
  • Article: SCIENTIFIC REPORTS. 2018;8(1):13164
    Alhendi AMN; Patrikakis M; Daub CO; Kawaji H; Itoh M; de Hoon M; Carninci P; Hayashizaki Y; Arner E; Khachigian LM
  • Article: OPEN BIOLOGY. 2018;8(8):180011
    Vacca A; Itoh M; Kawaji H; Arner E; Lassmann T; Daub CO; Carninci P; Forrest ARR; Hayashizaki Y; Aitken S; Semple CA
  • Article: CEREBELLUM. 2018;17(3):308-325
    Zhang PGY; Yeung J; Gupta I; Ramirez M; Ha T; Swanson DJ; Nagao-Sato S; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; de Hoon M; Carninci P; Forrest ARR; Hayashizaki Y; Goldowitz D
  • Article: AMERICAN JOURNAL OF HYPERTENSION. 2018;31(4):450-457
    Backdahl J; Andersson DP; Eriksson-Hogling D; Caidahl K; Thorell A; Mileti E; Daub CO; Arner P; Ryden M
  • Article: BMC GENOMICS. 2018;19(1):181
    Sugiaman-Trapman D; Vitezic M; Jouhilahti E-M; Mathelier A; Lauter G; Misra S; Daub CO; Kere J; Swoboda P
  • Show more

All other publications

  • Editorial comment: G3: GENES, GENOMES, GENETICS. 2020;10(11):3881
    Murgiano L; Becker D; Torjman D; Niggel JK; Milano A; Cullen C; Feng R; Wang F; Jagannathan V; Pearce-Kelling S; Katz ML; Leeb T; Aguirre GD; Kaukonen M; Quintero IB; Mukarram AK; Hytonen MK; Holopainen S; Wickstrom K; Kyostila K; Arumilli M; Jalomaki S; Daub CO; Kere J; Lohi H
  • Editorial comment: PLOS COMPUTATIONAL BIOLOGY. 2020;16(10):e1008260
    Stevens I; Mukarram AK; Hortenhuber M; Meehan TF; Rung J; Daub CO
  • Corrigendum: BMC GENOMICS. 2018;19(1):39
    Zhang P; Dimont E; Ha T; Swanson DJ; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; FANTOM Consortium; Carninci P; Hayashizaki Y; Forrest ARR; Hide W; Goldowitz D
  • Letter: NATURE BIOTECHNOLOGY. 2014;32(3):217-219
    Severin J; Lizio M; Harshbarger J; Kawaji H; Daub CO; Hayashizaki Y; Bertin N; Forrest ARR
  • Corrigendum: CELL. 2010;141(2):369
    Ravasi T; Suzuki H; Cannistraci CV; Katayama S; Bajic VB; Tan K; Akalin A; Schmeier S; Kanamori-Katayama M; Bertin N; Carninci P; Daub CO; Forrest ARR; Gough J; Grimmond S; Han J-H; Hashimoto T; Hide W; Hofmann O; Kamburov A; Kaur M; Kawaji H; Kubosaki A; Lassmann T; van Nimwegen E; MacPherson CR; Ogawa C; Radovanovic A; Schwartz A; Teasdale RD; Tegner J; Lenhard B; Teichmann SA; Arakawa T; Ninomiya N; Murakami K; Tagami M; Fukuda S; Imamura K; Kai C; Ishihara R; Kitazume Y; Kawai J; Hume DA; Ideker T; Hayashizaki Y
  • Corrigendum: NATURE GENETICS. 2009;41(7):859
    Taft RJ; Glazov EA; Cloonan N; Simons C; Stephen S; Faulkner GJ; Lassmann T; Forrest ARR; Grimmond SM; Schroder K; Irvine K; Arakawa T; Nakamura M; Kubosaki A; Hayashida K; Kawazu C; Murata M; Nishiyori H; Fukuda S; Kawai J; Daub CO; Hume DA; Suzuki H; Orlando V; Carninci P; Hayashizaki Y; Mattick JS
  • Published conference paper: BIOINFORMATICS. 2002;18:S231-S240
    Steuer R; Kurths J; Daub CO; Weise J; Selbig J

Employments

  • Principal Researcher, Department of Medicine, Huddinge, ̽ѡ, 2024-

Degrees and Education

  • Docent, ̽ѡ, 2015

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