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Dagliyan group

Our research group is interested in the molecular mechanisms influencing experience-driven activation and equilibration of neuronal circuits in the mouse brain.

Onur Dagliyan lab members

Probing and engineering neuroplasticity

We are currently studying the spatiotemporal dynamics of a set of proteins that transmit the signal from synapses to the nucleus by using a broad spectrum of techniques including protein engineering, imaging, biochemistry, electrophysiology, genomics, transcriptomics, and proteomics.

By focusing on experience-driven neuronal circuit responses at the molecular level, we aim to develop new therapeutic approaches for neurodevelopmental disorders such as autism spectrum disorders. We are located at the Molecular Neurobiology Division at Karolinska Institute, composed of outstanding scientists applying interdisciplinary approaches to cutting edge problems in a collaborative and stimulating environment.

Photo: Onur Dagliyan

Neuronal activity dependent molecular signaling processes are central for brain development and plasticity. These molecular events form the mechanistic basis of complex neural computation, learning and memory. Experience-driven activation of proteins often at the post-translational level mediate the rapid events including synaptic modifications, metabolic adaptations, and the transfer of the cytosolic protein signals into the nucleus to influence gene expression.

The Dagliyan laboratory focuses on specific molecular events happening at these different time scales, starting from the immediate modifications at the synapse, such as actin-modifying protein signaling, to longer time scale molecular events such as protein modifications that mediate transcription initiation, elongation, and RNA splicing, which are key processes for the behaviorally induced plasticity of neuronal circuits.

Photo: Onur Dagliyan

Protein signaling in cells is precisely coordinated in space and time. Like many other cell types, individual neurons within neuronal circuits use genetically encoded molecular networks to make complex decisions. The Dagliyan Lab is interested in the molecular logic and design principles governing the function of protein networks in neuronal circuits. To this end, we are building new molecular technologies that enable spatiotemporal dynamics of proteins that are inaccessible by other means.

We have previously engineered protein switches and sensors to reveal signaling dynamics of individual single cells. These sensors sense the conformational changes of proteins and thereby their activity states, whereas the protein switches we have created have enabled the control of conformation by engineered drug- or light-gated small domains inserted at allosteric sites of the target protein. We now use these tools, as well as the new types of tools we are currently generating, in neurons to deconstruct and reconstruct the protein networks within neuronal circuits.

Publications

Selected publications

  • Journal article: SCIENCE ADVANCES. 2023;9(46):eadh1110
    Ripoli C; Dagliyan O; Renna P; Pastore F; Paciello F; Sollazzo R; Rinaudo M; Battistoni M; Martini S; Tramutola A; Sattin A; Barone E; Saneyoshi T; Fellin T; Hayashi Y; Grassi C
  • Journal article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2023;24(2):917
    Pastore F; Battistoni M; Sollazzo R; Renna P; Paciello F; Li Puma DD; Barone E; Dagliyan O; Ripoli C; Grassi C
  • Journal article: BIOENGINEERING & TRANSLATIONAL MEDICINE. 2022;7(2):e10292
    Renna P; Ripoli C; Dagliyan O; Pastore F; Rinaudo M; Re A; Paciello F; Grassi C
  • Journal article: NATURE COMMUNICATIONS. 2022;13(1):430
    Cakir B; Tanaka Y; Kiral FR; Xiang Y; Dagliyan O; Wang J; Lee M; Greaney AM; Yang WS; DuBoulay C; Kural MH; Patterson B; Zhong M; Kim J; Bai Y; Min W; Niklason LE; Patra P; Park I-H
  • Journal article: CELL. 2021;184(22):5670-5685.e23
    Liu B; Stone OJ; Pablo M; Herron JC; Nogueira AT; Dagliyan O; Grimm JB; Lavis LD; Elston TC; Hahn KM
  • Journal article: NATURE. 2021;590(7844):115-121
    Yap E-L; Pettit NL; Davis CP; Nagy MA; Harmin DA; Golden E; Dagliyan O; Lin C; Rudolph S; Sharma N; Griffith EC; Harvey CD; Greenberg ME
  • Journal article: NATURE METHODS. 2020;17(9):928-936
    Wu HD; Kikuchi M; Dagliyan O; Aragaki AK; Nakamura H; Dokholyan NV; Umehara T; Inoue T
  • Journal article: CELL REPORTS. 2020;31(11):107764
    Ozkan-Dagliyan I; Diehl JN; George SD; Schaefer A; Papke B; Klotz-Noack K; Waters AM; Goodwin CM; Gautam P; Pierobon M; Peng S; Gilbert TSK; Lin KH; Dagliyan O; Wennerberg K; Petricoin EF; Tran NL; Bhagwat SV; Tiu RV; Peng S-B; Herring LE; Graves LM; Sers C; Wood KC; Cox AD; Der CJ
  • Journal article: CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019;57:17-22
    Dagliyan O; Hahne KM
  • Journal article: NATURE PROTOCOLS. 2019;14(6):1863-1883
    Dagliyan O; Dokholyan NV; Hahn KM
  • Journal article: NATURE COMMUNICATIONS. 2018;9(1):4042
    Dagliyan O; Krokhotin A; Ozkan-Dagliyan I; Deiters A; Der CJ; Hahn KM; Dokholyan NV
  • Journal article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(8):e1006321
    Ma X; Dagliyan O; Hahn KM; Danuser G
  • Journal article: ACS SYNTHETIC BIOLOGY. 2017;6(7):1257-1262
    Dagliyan O; Karginov AV; Yagishita S; Gale ME; Wang H; DerMardirossian C; Wells CM; Dokholyan NV; Kasai H; Hahn KM
  • Journal article: SCIENCE. 2016;354(6318):1441-1444
    Dagliyan O; Tarnawski M; Chu P-H; Shirvanyants D; Schlichting I; Dokholyan NV; Hahn KM
  • Journal article: NATURE CHEMICAL BIOLOGY. 2016;12(10):802-809
    Hodgson L; Spiering D; Sabouri-Ghomi M; Dagliyan O; DerMardirossian C; Danuser G; Hahn KM
  • Journal article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(8):3682-3692
    Shobair M; Dagliyan O; Kota P; Dang YL; He H; Stutts MJ; Dokholyan NV
  • Journal article: JOURNAL OF MOLECULAR BIOLOGY. 2014;426(10):2082-2097
    Furukawa Y; Teraguchi S; Ikegami T; Dagliyan O; Jin L; Hall D; Dokholyan NV; Namba K; Akira S; Kurosaki T; Baba Y; Standley DM
  • Journal article: JOURNAL OF MOLECULAR CELL BIOLOGY. 2014;6(2):104-115
    Redler RL; Shirvanyants D; Dagliyan O; Ding F; Kim DN; Kota P; Proctor EA; Ramachandran S; Tandon A; Dokholyan NV
  • Journal article: BIOCHEMISTRY. 2013;52(40):7082-7090
    Freeman TCJ; Black JL; Bray HG; Dagliyan O; Wu YI; Tripathy A; Dokholyan NV; Leisner TM; Parise LV
  • Journal article: CHEMISTRY AND BIOLOGY. 2013;20(6):847-856
    Kummer L; Hsu C-W; Dagliyan O; MacNevin C; Kaufholz M; Zimmermann B; Dokholyan NV; Hahn KM; Plueckthun A
  • Journal article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013;110(17):6800-6804
    Dagliyan O; Shirvanyants D; Karginov AV; Ding F; Fee L; Chandrasekaran SN; Freisinger CM; Smolen GA; Huttenlocher A; Hahn KM; Dokholyan NV
  • Journal article: PLOS ONE. 2012;7(2):e31787
    Cakir B; Dagliyan O; Dagyildiz E; Baris I; Kavakli IH; Kizilel S; Turkay M
  • Journal article: STRUCTURE. 2011;19(12):1837-1845
    Dagliyan O; Proctor EA; D'Auria KM; Ding F; Dokholyan NV
  • Journal article: PLOS ONE. 2011;6(2):e14579
    Dagliyan O; Uney-Yuksektepe F; Kavakli IH; Turkay M
  • Journal article: JOURNAL OF CHEMICAL INFORMATION AND MODELING. 2009;49(10):2403-2411
    Dagliyan O; Kavakli IH; Turkay M
  • Show more

Funding

Research support

  • European Research Council (ERC)
  • Swedish Research Council (VetenskapsrÃ¥det)
  • Svenska Sällskapet för Medicinsk Forskning (SSMF)
  • The Swedish Brain Foundation (Hjärnfonden)
  • The Strategic Research Area Neuroscience (StratNeuro)
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Collaborations

  • , Università Cattolica del Sacro Cuore School of Medicine in Rome, Italy
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  • Patrik Ernfors, ̽»¨¾«Ñ¡

Staff and contact

Group leader

All members of the group

Visiting address

Karolinska Insitutet, MBB, Division of Molecular Neurobiology, Biomedicum 6C, Stokcholm, Sweden

Alumni

Pranati Chalasani, B.S. student

Klara Gesché, B.S. student

Linn Thies, B.S. student

Yu (Ivy) Zhang, M.S. student

Qazi Samayeen Rahman, B.S. student

Aurora Boschini Roine, High school student

Keywords:
Biophysics Biophysics Biosensing Techniques Cell and Molecular Biology Learning Memory Neuronal Plasticity Neurosciences Optogenetics Protein Engineering Show all
Content reviewer:
Sara Lidman
15-05-2024